clowdr.controller package

Submodules

clowdr.controller.launcher module

clowdr.controller.launcher.configureResource(endpoint, auth, **kwargs)

clowdr.controller.metadata module

clowdr.controller.metadata.bidsTasks(clowdrloc, taskdict)

bidsTask Scans through BIDS app fields for creating more tasks than specified.

clowdrloc : str

Path for storing Clowdr intermediate files and outputs

taskdict : str

Dictionary of the tasks (pre-BIDS-ification)

tuple: (list, list)

The task dictionary JSONs, and associated Boutiques invocation files.

clowdr.controller.metadata.consolidateTask(tool, invocation, clowdrloc, dataloc, **kwargs)

consolidate Creates Clowdr task JSON files which summarize all associated metadata

tool : str

Path to a boutiques descriptor for the tool to be run

invocation : str

Path to a boutiques invocation for the tool and parameters to be run

clowdrloc : str

Path for storing Clowdr intermediate files and outputs

dataloc : str

Path for accessing input data

**kwargs : dict

Arbitrary keyword arguments (i.e. {‘verbose’: True})

tuple: (list, list)

The task dictionary JSONs, and associated Boutiques invocation files.

clowdr.controller.metadata.prepareForRemote(tasks, tmploc, clowdrloc)

prepare Scans through BIDS app fields for creating more tasks than specified.

clowdrloc : str

Path for storing Clowdr intermediate files and outputs

taskdict : str

Dictionary of the tasks (pre-BIDS-ification)

tuple: (list, list)

The task dictionary JSONs, and associated Boutiques invocation files.

clowdr.controller.metadata.sweepTasks(taskdicts, invocations, sweep_param)

Module contents