Manually Running Tasks¶
usage: clowdr task [-h] [--verbose] [--provdir PROVDIR] [--local] [--workdir WORKDIR] [--volumes VOLUMES] [--imagepath IMAGEPATH] tasklist [tasklist ...]
|tasklist||One or more Clowdr-created task.json files summarizing the jobs to be run. These task files are created by one of clowdr cloud or clowdr local.|
Toggles verbose output statements.
|--provdir, -p||Local or directory where Clowdr provenance records and metadata will be stored. This is optional here because it will be stored by default in a temporary location and moved, unless this is specified.|
Flag indicator to identify whether the task is being launched on a cloud or local resource. This is important to ensure data is transferred off clouds before shut down.
|--workdir, -w||Specifies the working directory to be used by the tasks created.|
|--volumes, -v||Specifies any volumes to be mounted to the container. This is usually related to the path of any data files as specified in your invocation(s).|
|--imagepath||If the Boutiques descriptor summarizes a tool wrapped in Singularity, and the image has already been downloaded, this option allows you to specify that image file.|